PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G077900.1
Common NameB456_008G077900, LOC105763380
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 175aa    MW: 19391.6 Da    PI: 9.9943
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G077900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552.1e-172271255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Gorai.008G077900.1 22 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 71
                        59*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.2E-302280IPR001471AP2/ERF domain
PROSITE profilePS5103221.972279IPR001471AP2/ERF domain
SMARTSM003804.2E-372285IPR001471AP2/ERF domain
PfamPF008476.3E-112371IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-212380IPR016177DNA-binding domain
PRINTSPR003672.6E-112334IPR001471AP2/ERF domain
CDDcd000183.05E-252381No hitNo description
PRINTSPR003672.6E-116181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MENGTGVVAS RESSRKSTAE RPYKGIRMRK WGKWVAEIRE PNKRSRIWLG SYSTPVAAAR  60
AYDTAVFYLR GPSARLNFPD LLAGERVGSA GGGSLGGDLS AATIRKKAIE VGARVDALEA  120
AHHHHHHHHH NHRGHNYNHG YDEELKPSTG GFLHRVDLNK MPDPEDSDGE WERK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-142379663ATERF1
3gcc_A1e-142379663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5272001e-105HQ527200.1 Gossypium herbaceum clone NBRI_E_EYT27PB03GAGF5 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437067.11e-125PREDICTED: ethylene-responsive transcription factor RAP2-10-like
RefseqXP_012437068.11e-125PREDICTED: ethylene-responsive transcription factor RAP2-10-like
RefseqXP_012437070.11e-125PREDICTED: ethylene-responsive transcription factor RAP2-10-like
RefseqXP_012437071.11e-125PREDICTED: ethylene-responsive transcription factor RAP2-10-like
SwissprotO221742e-62ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A0D2TWV91e-125A0A0D2TWV9_G
STRINGBra017811.1-P1e-61(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.15e-51DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]